PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03349.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 207aa    MW: 23256.4 Da    PI: 6.8119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03349.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-204190255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  Rsa1.0_03349.1_g00005.1 41 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDRAALKFKG 90
                             7********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-334099IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-234199IPR016177DNA-binding domain
PROSITE profilePS5103224.8034198IPR001471AP2/ERF domain
CDDcd000181.51E-334199No hitNo description
PfamPF008471.4E-134190IPR001471AP2/ERF domain
SMARTSM003804.0E-3841104IPR001471AP2/ERF domain
PRINTSPR003677.0E-124253IPR001471AP2/ERF domain
PRINTSPR003677.0E-126480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MISSLSRAIE YPTADGHDPV KQELDRSDQL QQDQDQPRKR HYRGVRQRPW GKWAAEIRDP  60
KKAARVWLGT FETAEDAALA YDRAALKFKG TKAKLNFPER VQGPSTTSYL ASQSGTDHSP  120
RGGSELMNSP PPQLGPSTTS SWPTNYNQDI LQYAQLLTSN NDDALSYYTS SLFSQQQQPF  180
STPSSSSSSL ASQQTQQQQE QQREEEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-3040102467ATERF1
3gcc_A6e-3040102467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893910.0AC189391.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622813.11e-114PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_013752414.11e-114PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9LYU37e-84EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A078C6651e-114A0A078C665_BRANA; BnaC03g05820D protein
TrEMBLA0A0D3B0X91e-114A0A0D3B0X9_BRAOL; Uncharacterized protein
STRINGBra006195.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-60related to AP2 6l